GermOnline | Tool name | GermOnline |
|---|
| URL | http://www.germonline.org |
|---|
| Important features | A curated database that provides microarray expression data for genes involved in mitosis and meiosis, gamete formation and germ line development across species. It also provides other information such as sample annotations, interactions, genome annotation (from Ensembl) and orthologs. |
|---|
| Citations | Primig M, Wiederkehr C, Basavaraj R, Sarrauste de Menthi\E8re C, Hermida L, Koch R, Schlecht U, Dickinson HG, Fellous M, Grootegoed JA, Hawley RS, J\E9gou B, Maro B, Nicolas A, Orr-Weaver T, Schedl T, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Lamb N, Esposito RE. GermOnline, a new cross-species community annotation database on germ-line development and gametogenesis. Nat Genet. 2003 Dec;35(4):291-2. PubMed PMID: 14647278. |
|---|
| Year of publication | 2003 |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | Database displays only expression data obtained with high-density oligonucleotide microarrays (GeneChips). |
|---|
| Function | Microarray, Human, Mouse, Rat, Other species, Multiple species |
|---|
| Category | Online, Free |
|---|
| Working status | Functional |
|---|
| Other features | |
|---|
| Other citations | 1. Wiederkehr C, Basavaraj R, Sarrauste de Menthi\E8re C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, Dumitrescu T, Fellous M, Goldman A, Grootegoed JA, Hawley R, Ishii R, J\E9gou B, Kaufman RJ, Klein F, Lamb N, Maro B, Nasmyth K, Nicolas A, Orr-Weaver T, Philippsen P, Pineau C, Rabitsch KP, Reinke V, Roest H, Saunders W, SchrF6der M, Schedl T, Siep M, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Esposito RE, Primig M. GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D560-7. PubMed PMID: 14681481; PubMed Central PMCID: PMC308789. 2. Wiederkehr C, Basavaraj R, Sarrauste de Menthi\E8re C, Koch R, Schlecht U, Hermida L, Masdoua B, Ishii R, Cassen V, Yamamoto M, Lane C, Cherry M, Lamb N, Primig M. Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation. Bioinformatics. 2004 Mar 22;20(5):808-11. Epub 2004 Jan 29. PubMed PMID: 14751982. 3. Gattiker A, Niederhauser-Wiederkehr C, Moore J, Hermida L, Primig M. The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction. Nucleic Acids Res. 2007 Jan;35(Database issue):D457-62. Epub 2006 Dec 1. PubMed PMID: 17145711; PubMed Central PMCID: PMC1751528. 4. Lardenois A, Gattiker A, Collin O, Chalmel F, Primig M. GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle. Database (Oxford). 2010 Dec 11;2010:baq030. Print 2010. PubMed PMID: 21149299; PubMed Central PMCID: PMC3004465. |
|---|
| |
